miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|74512697|gb|DT729578.1|DT729578 CAATGACTACTGCTTTCACTTCTCATCTTTCTTCCAAAATCAAAACCCCTTTCTTAGATAACCAATCATCTTTCCATGTC
ACTCCATCTCGCATCCAACTCACTCGTTCATCTTCCCCAAACACTCACATCACCATGTCTTCATCATCATCATCATCATC
TTCATCTTATGATCTATCTTCCTTCAAATTTGAACCAATTAAGGAATCCATTGTATCACGTGAGATGACTCGCAGATACA
TGATGGATATGATTACATATGCTGACACTGATGTTGTTGTTGTTGGAGCAGGTTCAGCAGGTCTTTCTTGTGCTTATGAA
ATGAGCAAAAACCCTAACATCAACATCGCTATTATCGAACAATCTGTCAGTCCTGGTGGTGGTGCTTGGTTAGGTGGTCA
GCTTTTTTCTGCCATGGTTGTTCGCAAACCTGCTCACATCTTCCTTGATGAACTCGGTGTTGAATACGATGAACAAGACA
CCTATGTTGTTATCAAGCACGCTGCCTTGTTTACATCCACAATCATGTCTAAGCTTTTGGCTAAACCAAATGTGAAACTT
TTTAATGCTGTTGCTGCTGAGGATTTGATCGTGAAAGAAGGTAAAGTTGCTGGGGTTGTCACAAATTGGGCTTTGGTTTC
TATGAATCATGATACACAATCATGTATGGATCCAAATGTAATGGAAGCTAAGATTGTTGTCAGTTCTTGTGGCCATGATG
GTCCTTTTGGTGCTACTGGTGTGAGAGCTGAGAGCATTGGAATGATTGATTCTGTTCCTGGTATGAAAGCTCTTGATATG
ATACTGCTGAGA




Most similar to sp|O23787|THI4_CITSI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O23787|THI4_CITSI Thiazole biosynthetic enzyme, chloroplastic
           OS=Citrus sinensis GN=THI1 PE=2 SV=1
          Length = 356

 Score =  373 bits (958), Expect = e-103
 Identities = 199/267 (74%), Positives = 210/267 (78%), Gaps = 2/267 (0%)
 Frame = +3

Query: 6   TTAFTSHLSSKIKTPFLDNQSSFHVTPSRIQLTRXXXXXXXXXXXXXXXXXXXXXXXXX- 182
           +TAF   +SS     F    SSFH  P    L R                          
Sbjct: 6   STAFAPSVSSTTNKLF---DSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNT 62

Query: 183 FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINIAIIEQ 362
           FKF+PIKESIVSREMTRRYM DMITYADTD    GAGSAGLSCAYE+SKNPNI IAIIEQ
Sbjct: 63  FKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ 122

Query: 363 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIMSKLLA 542
           SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG++YDEQD YVVIKHAALFTSTIMSKLLA
Sbjct: 123 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA 182

Query: 543 KPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 722
           +PNVKLFNAVAAEDLIVK G+V GVVTNWALVSMNHDTQSCMDPNVMEAK+VVSSCGHDG
Sbjct: 183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242

Query: 723 PFGATGV-RAESIGMIDSVPGMKALDM 800
           PFGATGV R +SIGMI+ VPGMKALDM
Sbjct: 243 PFGATGVKRLKSIGMIEEVPGMKALDM 269